moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsByName:2010-01-23T07-21-54Z http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsByName Retrieves a basic genetic element by its exact name http://mips.gsf.de/proj/planet/moby/RDF/getElementsByName.rdf getElementsByName true manuel.spannagl@gsf.de mips.gsf.de getElementsByName input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getUnsplicedSequence:2010-01-23T07-25-17Z http://mips.gsf.de/proj/plant/webapp/axis/services/getUnsplicedSequence Retrieves Unspliced sequence for a genetic element name http://mips.gsf.de/proj/planet/moby/RDF/getUnsplicedSequence.rdf getUnsplicedSequence true manuel.spannagl@gsf.de mips.gsf.de getUnsplicedSequence input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getTmhmmPrediction:2008-10-12T06-07-29Z http://mips.gsf.de/proj/plant/webapp/axis/services/getTmhmmPrediction Applies the TMHMM 2.0 program for transmembrane helices prediction by Anders Krogh on a given protein sequence with default parameters. Output is the original result report. For more information see http://www.cbs.dtu.dk/services/TMHMM-2.0/. http://mips.gsf.de/proj/planet/moby/RDF/getTmhmmPrediction.rdf getTmhmmPrediction false manuel.spannagl@gsf.de mips.gsf.de getTmhmmPrediction input_seq output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getContigsByFreeText:2010-01-23T07-20-01Z http://mips.gsf.de/proj/plant/webapp/axis/services/getContigsByFreeText parses Element Names out of any text-xml or text-formatted (output sorted by alphabet) http://mips.gsf.de/proj/planet/moby/RDF/getContigsByFreeText.rdf getContigsByFreeText true manuel.spannagl@gsf.de mips.gsf.de getContigsByFreeText input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementAnnotation:2010-01-23T07-09-35Z http://mips.gsf.de/proj/plant/webapp/axis/services/getElementAnnotation Retrieve annotation for the given genetic element http://mips.gsf.de/proj/planet/moby/RDF/getElementAnnotation.rdf getElementAnnotation true manuel.spannagl@gsf.de mips.gsf.de getElementAnnotation input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getMIPSArabidopsisAnnotationAsGFF3:2008-10-12T06-05-46Z http://mips.gsf.de/proj/plant/webapp/axis/services/getMIPSArabidopsisAnnotationAsGFF3 Retrieves the MIPS Arabidopsis Genetic Element Annotation from matdb2 identified by the given name/code/id in GFF3-format http://mips.gsf.de/proj/planet/moby/RDF/getMIPSArabidopsisAnnotationAsGFF3.rdf getMIPSArabidopsisAnnotationAsGFF3 false manuel.spannagl@gsf.de mips.gsf.de getMIPSArabidopsisAnnotationAsGFF3 input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElement:2008-11-07T11-15-12Z http://mips.gsf.de/proj/plant/webapp/axis/services/getElement Get genetic element report from MIPS PlantsDB. http://mips.gsf.de/proj/planet/moby/RDF/getElement.rdf getElement true mihaela.martis@helmholtz-muenchen.de mips.gsf.de getElement input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getContigsByName:2010-01-23T07-26-29Z http://mips.gsf.de/proj/plant/webapp/axis/services/getContigsByName Retrieves Contigs list for a contig name http://mips.gsf.de/proj/planet/moby/RDF/getContigsByName.rdf getContigsByName true manuel.spannagl@gsf.de mips.gsf.de getContigsByName input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsOfType:2010-01-23T07-22-29Z http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsOfType Retrieves a list of all genetic elements of a given element type http://mips.gsf.de/proj/planet/moby/RDF/getElementsOfType.rdf getElementsOfType true manuel.spannagl@gsf.de mips.gsf.de getElementsOfType input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getClonesByFreeText:2010-01-23T07-22-24Z http://mips.gsf.de/proj/plant/webapp/axis/services/getClonesByFreeText Retrieves all clone annotation for given search text http://mips.gsf.de/proj/planet/moby/RDF/getClonesByFreeText.rdf getClonesByFreeText true manuel.spannagl@gsf.de mips.gsf.de getClonesByFreeText input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getAllGeneticElements:2010-01-23T07-18-37Z http://mips.gsf.de/proj/plant/webapp/axis/services/getAllGeneticElements Retrieves all genetic element names matching given search string (for example all AGI locus codes for search string "At") http://mips.gsf.de/proj/planet/moby/RDF/getAllGeneticElements.rdf getAllGeneticElements true manuel.spannagl@gsf.de mips.gsf.de getAllGeneticElements input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getAramemnonRefsByAgi:2008-10-12T06-03-05Z http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/ArawsServices.cgi Returns collection of pubmed ids for a given agi locus code. Based on the manually curated set of membrane protein related references of ARAMEMNON (http://aramemnon.botanik.uni-koeln.de) http://mips.gsf.de/proj/planet/moby/RDF/getAramemnonRefsByAgi.rdf getAramemnonRefsByAgi false manuel.spannagl@gsf.de mips.gsf.de getAramemnonRefsByAgi inputAgi knownReferences moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getTairRefsByAgi:2008-10-12T06-05-37Z http://mips.gsf.de/cgi-bin/proj/planet/moby/MOBY/Services/ArawsServices.cgi Returns collection of pubmed ids for a given agi locus code. Based on the literature collection of TAIR (arabidopsis.org). Example input: At2g17950. http://mips.gsf.de/proj/planet/moby/RDF/getTairRefsByAgi.rdf getTairRefsByAgi false manuel.spannagl@gsf.de mips.gsf.de getTairRefsByAgi inputAgi knownReferences moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getGeneticElementsOfType:2010-01-23T07-26-20Z http://mips.gsf.de/proj/plant/webapp/axis/services/getGeneticElementsOfType Retrieve all genetic elements for given element type http://mips.gsf.de/proj/planet/moby/RDF/getGeneticElementsOfType.rdf getGeneticElementsOfType true manuel.spannagl@gsf.de mips.gsf.de getGeneticElementsOfType input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsByFreeText:2010-01-23T07-25-44Z http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsByFreeText Retrieves a list of basic genetic elements with names matching the input string http://mips.gsf.de/proj/planet/moby/RDF/getElementsByFreeText.rdf getElementsByFreeText true manuel.spannagl@gsf.de mips.gsf.de getElementsByFreeText input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getElementsForContig:2009-06-23T06-07-45Z http://mips.gsf.de/proj/plant/webapp/axis/services/getElementsForContig retrieve all genetic elements for given contig as collection of plain-text objects (eg. mth2-11e1) http://mips.gsf.de/proj/planet/moby/RDF/getElementsForContig.rdf getElementsForContig false manuel.spannagl@gsf.de mips.gsf.de getElementsForContig input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getSplicedSequence:2010-01-23T07-20-23Z http://mips.gsf.de/proj/plant/webapp/axis/services/getSplicedSequence Retrieves Spliced sequence for a genetic element name http://mips.gsf.de/proj/planet/moby/RDF/getSplicedSequence.rdf getSplicedSequence true manuel.spannagl@gsf.de mips.gsf.de getSplicedSequence input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getProteinSequence:2008-12-23T20-08-05Z http://mips.gsf.de/proj/plant/webapp/axis/services/getProteinSequence Retrieves Protein sequence for a genetic element name http://mips.gsf.de/proj/planet/moby/RDF/getProteinSequence.rdf getProteinSequence true manuel.spannagl@gsf.de mips.gsf.de getProteinSequence input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getGeneticElementNameByFreeText:2010-01-23T07-22-52Z http://mips.gsf.de/proj/plant/webapp/axis/services/getGeneticElementNameByFreeText retrieves genetic element names related to the given keyword from all MIPS databases (arabidopsis, medicago, maize, rice) http://mips.gsf.de/proj/planet/moby/RDF/getGeneticElementNameByFreeText.rdf getGeneticElementNameByFreeText true manuel.spannagl@gsf.de mips.gsf.de getGeneticElementNameByFreeText input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getClonesForChromosome:2008-10-12T05-59-29Z http://mips.gsf.de/proj/plant/webapp/axis/services/getClonesForChromosome Retrieves all clone names for given chromosome number http://mips.gsf.de/proj/planet/moby/RDF/getClonesForChromosome.rdf getClonesForChromosome false manuel.spannagl@gsf.de mips.gsf.de getClonesForChromosome input output moby urn:lsid:biomoby.org:serviceinstance:mips.gsf.de,getClonesByName:2010-01-23T07-17-07Z http://mips.gsf.de/proj/plant/webapp/axis/services/getClonesByName Retrieves annotation for given clone name. http://mips.gsf.de/proj/planet/moby/RDF/getClonesByName.rdf getClonesByName true manuel.spannagl@gsf.de mips.gsf.de getClonesByName input output moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByInsertNumber:2006-08-29T07-48-07Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given Arabidopsis insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CSHL:ET84. getEMBLaccessionByInsertNumber false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByInsertNumber ATH_Insert_number EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByEMBL:2006-08-29T07-48-22Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the Arabidosis allele for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: X98772. getArabidopsisAlleleByEMBL false beatrice@arabidopsis.info arabidopsis.info getArabidopsisAlleleByEMBL EMBL NASCallele moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByMGEDExperimentDesignType:2006-08-25T13-41-37Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves NASCArrays experiment description for a given MGED experiment design type from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: time_series_design. getNASCArraysExpDescriptionByMGEDExperimentDesignType false beatrice@arabidopsis.info arabidopsis.info getNASCArraysExpDescriptionByMGEDExperimentDesignType MGEDExperimentDesignType NASCexperimentDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByKeyword:2006-08-29T07-48-32Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: trichomes. getNASCstockNameByKeyword false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByKeyword Global_Keyword NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByDonorName:2006-08-29T07-48-27Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given donor surname from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Relichova. getNASCstockNameByDonorName false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByDonorName NASCdonorName NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByStockName:2006-08-29T07-49-04Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: An-1". getNASCstockCodeByStockName false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByStockName NASCstockName StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByAGI:2006-08-29T07-47-53Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given AGI locus code from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: At1g20300 getNASCphenotypeByAGI false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByAGI AGI_LocusCode Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysSlideByReferenceNumber:2006-08-29T15-19-22Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves slide names for a given reference number from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'NASCARRAYS-389'. getNASCArraysSlideByReferenceNumber false beatrice@arabidopsis.info arabidopsis.info getNASCArraysSlideByReferenceNumber NASCArraysReferenceNumber NASCArraysSlide moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByAGI:2006-08-29T07-47-40Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'At1g19100'. getNASCstockNameByAGI false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByAGI AGI_LocusCode NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByLocus:2006-08-29T07-48-09Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2. getEMBLaccessionByLocus false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByLocus ArabidopsisGeneSymbol EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByABRCcode:2006-08-29T07-48-21Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the Arabidosis allele for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20. getArabidopsisAlleleByABRCcode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisAlleleByABRCcode ABRC_code NASCallele moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByLocus:2006-08-29T07-48-33Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: psv. getNASCstockNameByLocus false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByLocus ArabidopsisGeneSymbol NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisGrowthRequirementsByABRCcode:2006-08-29T07-47-35Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the growth requirements for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'CS20', 'CS3', 'CS90'. getArabidopsisGrowthRequirementsByABRCcode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisGrowthRequirementsByABRCcode ABRC_code GrowthRequirements moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisGrowthRequirementsByNASCstockCode:2006-08-29T07-47-34Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the growth requirements for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N6', 'N933', 'N20'. getArabidopsisGrowthRequirementsByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisGrowthRequirementsByNASCstockCode NASC_code GrowthRequirements moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,NASCArraysGeneswingerByAGAffymetrixProbeSetID:2006-08-29T11-15-48Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Runs the analysis tool, GeneSwinger for a given Affymetrix probeset ID from the AG chip. (http://affy.arabidopsis.info). Example input: 13129_f_at. NASCArraysGeneswingerByAGAffymetrixProbeSetID false beatrice@arabidopsis.info arabidopsis.info NASCArraysGeneswingerByAGAffymetrixProbeSetID AffymetrixProbeSetID NASCArraysGeneSwinger moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByEMBL:2006-08-29T07-48-30Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Y15193. getNASCstockNameByEMBL false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByEMBL EMBL NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByEMBL:2006-08-29T07-48-50Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC insert numbers for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: AB028622. getNASCinsertByEMBL false beatrice@arabidopsis.info arabidopsis.info getNASCinsertByEMBL EMBL InsertNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByDonorNumber:2006-08-29T07-48-28Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000014. getNASCstockNameByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByDonorNumber NASCdonorNumber NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByMutagen:2006-08-29T07-49-03Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NMB". getNASCstockCodeByMutagen false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByMutagen NASCmutagen StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByNASCstockCode:2006-08-29T07-48-46Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC mutagens for a given NASC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N3074. getArabidopsisMutagenByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisMutagenByNASCstockCode NASC_code NASCmutagen moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,NASCArraysGeneswingerByAGI:2007-11-15T15-50-52Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Runs the NASCArrays analysis tool, GeneSwinger for a given AGI locus code. (http://affy.arabidopsis.info). This tool allows you to find interesting experiments for a gene. It shows you experiments where the gene you choose is highly variable, over all the experiments in the database. See the NASCArrays website for more details on what this does and how to use it (http://affymetrix.arabidopsis.info/internal/help/helpgeneswinger.html). Example input: At3g52590. NASCArraysGeneswingerByAGI false beatrice@arabidopsis.info arabidopsis.info NASCArraysGeneswingerByAGI AGI_LocusCode NASCArraysGeneSwinger moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCdonorNumber:2006-08-30T12-21-25Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: DP23, L4, 304. getArabidopsisImageByNASCdonorNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByNASCdonorNumber NASCdonorNumber NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByEcotypeName:2006-08-29T07-48-29Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given ecotype name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: S96. getNASCstockNameByEcotypeName false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByEcotypeName NASCecotypeName NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCstockCode:2006-08-29T07-48-00Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis publications for a given NASC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N500013'. getArabidopsisPublicationsByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisPublicationsByNASCstockCode NASC_code Publication moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByNASCstockCode:2006-08-29T07-48-19Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the Arabidosis allele for a given NASC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N6. getArabidopsisAlleleByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisAlleleByNASCstockCode NASC_code NASCallele moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisHabitatByNASCstockName:2006-08-29T07-47-36Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the habitat in which Arabidopsis grows for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'An-1'. getArabidopsisHabitatByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisHabitatByNASCstockName NASCstockName ArabidopsisHabitat moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByABRCcode:2006-08-29T07-49-06Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given ABRC code from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: CS20. getNASCphenotypeByABRCcode false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByABRCcode ABRC_code Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByInsertNumber:2006-08-29T07-49-00Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock codes for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008. getNASCstockCodeByInsertNumber false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByInsertNumber ATH_Insert_number StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByNASCstockCode:2006-08-29T07-48-16Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the locus for a given a stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N6, N4, N3074. getArabidopsisLocusByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisLocusByNASCstockCode NASC_code Locus moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByLocus:2006-08-29T07-49-02Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given locus in Arabidopsis from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5. getNASCstockCodeByLocus false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByLocus ArabidopsisGeneSymbol StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByMutagen:2006-08-29T07-48-34Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NMB. getNASCstockNameByMutagen false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByMutagen NASCmutagen NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisGrowthRequirementsByNASCstockName:2006-08-29T07-47-29Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the growth requirements for a given NASC stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'eceriferum', 'Landsberg erecta'. getArabidopsisGrowthRequirementsByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisGrowthRequirementsByNASCstockName NASCstockName GrowthRequirements moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockAvailabilityByDonorNumber:2006-08-29T07-47-44Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the availability of a stock for a donor number given from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'. getNASCstockAvailabilityByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCstockAvailabilityByDonorNumber NASCdonorNumber Availability moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASC_codebyAGI_locus:2006-08-30T13-30-59Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC_codes for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At1g20310. getNASC_codebyAGI_locus false beatrice@arabidopsis.info arabidopsis.info getNASC_codebyAGI_locus AGI_LocusCode NASC_code moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCstockName:2006-08-29T07-47-55Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis seed type for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'root hair defective'. getArabidopsisSeedTypeByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisSeedTypeByNASCstockName NASCstockName SeedType moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByCollection:2006-08-29T07-48-55Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given collection name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CAUT. getNASCstockCodeByCollection false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByCollection NASCcollection StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByEMBL:2006-08-29T07-48-59Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Y15193. getNASCstockCodeByEMBL false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByEMBL EMBL StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,NASCArraysGeneswingerByATH1AffymetrixProbeSetID:2006-08-29T11-15-46Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Runs the analysis tool, GeneSwinger for a given Affymetrix probeset ID from the ATH1 chip. (http://affy.arabidopsis.info). Example input: 252056_at. NASCArraysGeneswingerByATH1AffymetrixProbeSetID false beatrice@arabidopsis.info arabidopsis.info NASCArraysGeneswingerByATH1AffymetrixProbeSetID AffymetrixProbeSetID NASCArraysGeneSwinger moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCstockCode:2006-08-30T12-21-21Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the images for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NW77. getArabidopsisImageByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByNASCstockCode NASC_code NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByEMBL:2006-08-29T07-49-16Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given EMBL accession (http://arabidopsis.info). Example input: X98772 getNASCphenotypeByEMBL false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByEMBL EMBL Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCdonorNumber:2006-08-29T07-47-58Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis seed type for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'. getArabidopsisSeedTypeByNASCdonorNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisSeedTypeByNASCdonorNumber NASCdonorNumber SeedType moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByNASCArraysSlide:2006-08-27T13-24-22Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves NASCArrays experiment description for a given slide name, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Durrant_1-1_wild-type_Rep1_ATH1'. getNASCArraysExpDescriptionByNASCArraysSlide false beatrice@arabidopsis.info arabidopsis.info getNASCArraysExpDescriptionByNASCArraysSlide NASCArraysSlide NASCexperimentDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByAllele:2006-08-29T07-49-11Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given allele from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: cer5-1 getNASCphenotypeByAllele false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByAllele NASCallele Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByNASCstockName:2006-08-29T07-48-13Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: AT_111. getEMBLaccessionByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByNASCstockName NASCstockName EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByReferenceNumber:2006-08-25T11-45-33Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves NASCArrays experiment description for a given from NASCArrays reference number from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: NASCARRAYS-136. getNASCArraysExpDescriptionByReferenceNumber false beatrice@arabidopsis.info arabidopsis.info getNASCArraysExpDescriptionByReferenceNumber NASCArraysReferenceNumber NASCexperimentDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCinsertNumber:2006-08-29T07-48-01Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis publications for a given Arabidopsis insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: '083008'. getArabidopsisPublicationsByNASCinsertNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisPublicationsByNASCinsertNumber ATH_Insert_number Publication moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByEcotypeName:2006-08-29T07-48-58Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given ecotype name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Ag-0. getNASCstockCodeByEcotypeName false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByEcotypeName NASCecotypeName StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByDonorName:2006-08-29T07-49-12Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given donor surname from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: Hobbie getNASCphenotypeByDonorName false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByDonorName NASCdonorName Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByName:2006-08-27T13-54-58Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves NASCArrays experiment description for a given experiment name, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Comparison of transcriptional profiles between sni1 and wild type' getNASCArraysExpDescriptionByName false beatrice@arabidopsis.info arabidopsis.info getNASCArraysExpDescriptionByName NASCArraysExperimentName NASCexperimentDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByLocus:2006-08-29T07-49-08Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given Arabidopsis gene symbol from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: cer2 getNASCphenotypeByLocus false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByLocus ArabidopsisGeneSymbol Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByEMBL:2006-08-29T07-48-15Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the locus for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Y15193. getArabidopsisLocusByEMBL false beatrice@arabidopsis.info arabidopsis.info getArabidopsisLocusByEMBL EMBL Locus moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByNASCstockName:2006-08-29T07-48-17Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the locus for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: apetala. getArabidopsisLocusByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisLocusByNASCstockName NASCstockName Locus moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByAllele:2006-08-29T07-48-54Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5-1. getNASCstockCodeByAllele false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByAllele NASCallele StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByEMBL:2006-08-29T07-47-47Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the NASC donor name for a given EMBL accession number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'X98772'. getNASCdonorNameByEMBL false beatrice@arabidopsis.info arabidopsis.info getNASCdonorNameByEMBL EMBL NASCdonorName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysReferenceNumberByExperimentName:2006-08-27T16-05-35Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves the NASCArrays reference number for a given NASCArrays experiment name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Baseline experiment floral homeotics'. getNASCArraysReferenceNumberByExperimentName false beatrice@arabidopsis.info arabidopsis.info getNASCArraysReferenceNumberByExperimentName NASCArraysExperimentName NASCArraysReferenceNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCstockCode:2006-08-29T07-47-57Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis seed type for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N3074. getArabidopsisSeedTypeByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisSeedTypeByNASCstockCode NASC_code SeedType moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByDonorNumber:2006-08-29T07-47-41Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the description of a stock for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'. getNASCstockDescriptionByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCstockDescriptionByDonorNumber NASCdonorNumber StockDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByStockName:2006-08-29T07-47-39Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the description of a stock for a given name of a stock from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'albina', 'ZWILLE'. getNASCstockDescriptionByStockName false beatrice@arabidopsis.info arabidopsis.info getNASCstockDescriptionByStockName NASCstockName StockDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockAvailabilityByNASCstockCode:2006-08-29T07-47-44Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the availability of a stock for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N20', 'N901', 'N960', 'N1150'. getNASCstockAvailabilityByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCstockAvailabilityByNASCstockCode NASC_code Availability moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCecotypeName:2006-08-30T12-21-15Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Ag-0, Bla-10, Br-0, Fe-1. getArabidopsisImageByNASCecotypeName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByNASCecotypeName NASCecotypeName NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByInsertNumber:2006-08-29T07-48-31Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008. getNASCstockNameByInsertNumber false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByInsertNumber ATH_Insert_number NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByLocus:2006-08-29T07-48-51Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC insert numbers for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At4g22165. getNASCinsertByLocus false beatrice@arabidopsis.info arabidopsis.info getNASCinsertByLocus ArabidopsisGeneSymbol InsertNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByAllele:2006-08-30T12-21-26Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2-1, arc1-1. getArabidopsisImageByAllele false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByAllele NASCallele NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByMutagen:2006-08-29T07-48-10Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: gamma rays. getEMBLaccessionByMutagen false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByMutagen NASCmutagen EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByNASCstockName:2006-08-29T07-48-20Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the Arabidosis allele for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: apetala. getArabidopsisAlleleByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisAlleleByNASCstockName NASCstockName NASCallele moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByNASCstockCode:2006-08-29T07-48-35Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N4, N6, N1654, N933. getNASCstockNameByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByNASCstockCode NASC_code NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByNASCstockCode:2006-08-29T07-48-12Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N3574. getEMBLaccessionByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByNASCstockCode NASC_code EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByABRCcode:2006-08-29T07-48-03Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20. getEMBLaccessionByABRCcode false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByABRCcode ABRC_code EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockAvailabilityByNASCstockName:2006-08-29T07-47-45Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the availability of a stock for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'angustifolia', 'chlorina', 'brevipedicellus', 'agamous'. getNASCstockAvailabilityByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getNASCstockAvailabilityByNASCstockName NASCstockName Availability moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByAGI:2006-08-29T07-47-46Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC inserts for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At1g11900. getNASCinsertByAGI false beatrice@arabidopsis.info arabidopsis.info getNASCinsertByAGI AGI_LocusCode ATH_Insert_number moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByAllele:2006-08-29T07-48-04Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5-1. getEMBLaccessionByAllele false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByAllele NASCallel EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByAGI:2006-06-22T14-27-22Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves an Arabidopsis Image for a given AGI Locus Code from NASCs Germplasm database (http://arabidopsis.info). Examples include: At4g24510 and At2g26670 getArabidopsisImageByAGI false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByAGI input_name NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByDonorName:2006-08-29T07-48-05Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given donor surname from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Hobbie. getEMBLaccessionByDonorName false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByDonorName NASCdonorName EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisAlleleByLocus:2006-08-29T07-48-18Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the Arabidosis allele for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2. getArabidopsisAlleleByLocus false beatrice@arabidopsis.info arabidopsis.info getArabidopsisAlleleByLocus ArabidopsisGeneSymbol NASCallele moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByEMBL:2006-08-29T07-48-42Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC mutagens for a given from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: X98772. getArabidopsisMutagenByEMBL false beatrice@arabidopsis.info arabidopsis.info getArabidopsisMutagenByEMBL EMBL NASCmutagen moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByDonorNumber:2006-08-29T07-49-17Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given a donor number (http://arabidopsis.info). Example input: salk_000013 getNASCphenotypeByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByDonorNumber NASCdonorNumber Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysSlideByNASCstockCode:2006-08-29T15-17-24Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves slide names for a given NASC stock ocde from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: N1093. getNASCArraysSlideByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCArraysSlideByNASCstockCode NASC_code NASCArraysSlide moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByNASCstockName:2006-08-29T07-47-48Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the NASC donor name for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'An-1', 'AT_3462', 'chlorina', 'AT_111'. getNASCdonorNameByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getNASCdonorNameByNASCstockName NASCstockName NASCdonorName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByNASCstockCode:2006-08-29T07-48-52Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC insert numbers for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: N700001. getNASCinsertByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCinsertByNASCstockCode NASC_code InsertNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByNASCdonorNumber:2006-08-29T07-48-39Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC ecotypes for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000013. getArabidopsisEcotypeByNASCdonorNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisEcotypeByNASCdonorNumber NASCdonorNumber NASCecotypeName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByEMBL:2006-08-29T07-48-37Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC ecotypes for a given EMBL accession from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input:X98772 . getArabidopsisEcotypeByEMBL false beatrice@arabidopsis.info arabidopsis.info getArabidopsisEcotypeByEMBL EMBL NASCecotypeName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByNASCstockCode:2006-08-29T07-48-40Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC ecotypes for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: NW20. getArabidopsisEcotypeByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisEcotypeByNASCstockCode NASC_code NASCecotypeName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByAllele:2006-08-29T07-48-26Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Cer-1. getNASCstockNameByAllele false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByAllele NASCallele NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByNASCstockName:2006-08-29T07-49-10Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given NASC stock name from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input:An-1. getNASCphenotypeByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByNASCstockName NASCstockName Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameByABRCcode:2006-08-29T07-48-25Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20. getNASCstockNameByABRCcode false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameByABRCcode ABRC_code NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByDonorNumber:2006-08-29T07-48-49Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC insert numbers for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000013. getNASCinsertByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCinsertByDonorNumber NASCdonorNumber InsertNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByNASCstockName:2006-08-29T07-48-53Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC insert numbers for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: AT_111. getNASCinsertByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getNASCinsertByNASCstockName NASCstockName InsertNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByDonorNumber:2006-08-29T07-47-51Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves donor surname for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000014'. getNASCdonorNameByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCdonorNameByDonorNumber NASCdonorNumber NASCdonorName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisSeedTypeByNASCinsertNumber:2006-08-29T07-47-56Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis seed type for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: launchpad:1A. getArabidopsisSeedTypeByNASCinsertNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisSeedTypeByNASCinsertNumber ATH_Insert_number SeedType moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByKeyword:2006-08-29T07-49-01Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given Keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: dwarf. getNASCstockCodeByKeyword false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByKeyword Global_Keyword StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByDonorNumber:2006-08-29T07-48-57Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the NASC Stock code for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 304. getNASCstockCodeByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByDonorNumber NASCdonorNumber StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByNASCdonorNumber:2006-08-29T07-48-45Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC mutagens for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: salk_000013. getArabidopsisMutagenByNASCdonorNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisMutagenByNASCdonorNumber NASCdonorNumber NASCmutagen moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCdonorNumber:2006-08-29T07-47-59Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis publications for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013'. getArabidopsisPublicationsByNASCdonorNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisPublicationsByNASCdonorNumber NASCdonorNumber Publication moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByKeyword:2006-08-29T07-48-08Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: trichomes. getEMBLaccessionByKeyword false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByKeyword Global_Keyword EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCstockName:2006-08-30T12-21-19Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given NASC stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: brevipedicellus, Angustifolia, Dentata. getArabidopsisImageByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByNASCstockName NASCstockName NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByABRCcode:2006-08-29T07-47-50Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the NASC donor name(s) for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'CS20', 'CS70', 'CS7'. getNASCdonorNameByABRCcode false beatrice@arabidopsis.info arabidopsis.info getNASCdonorNameByABRCcode ABRC_code NASCdonorName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByInsertNumber:2006-08-29T07-49-15Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given insert number from NASCs Germplasm database (http://arabidopsis.info). Example input: 083008 getNASCphenotypeByInsertNumber false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByInsertNumber ATH_Insert_number Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCinsertNumber:2006-08-20T09-16-42Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given Insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'CSHL:ET14'. getArabidopsisImageByNASCinsertNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByNASCinsertNumber ATH_Insert_number NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByABRCcode:2006-08-30T12-21-17Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS30. getArabidopsisImageByABRCcode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByABRCcode ABRC_code NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByKeyword:2006-08-30T12-21-14Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given keyword from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'asymmetric', 'epicuticular wax layer'. getArabidopsisImageByKeyword false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByKeyword Global_Keyword NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByABRCcode:2006-08-29T07-49-05Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS20". getNASCstockCodeByABRCcode false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByABRCcode ABRC_code StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByDonorName:2006-08-29T07-48-56Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC Stock code for a given donor surname from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Plieth. getNASCstockCodeByDonorName false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByDonorName NASCdonorName StockCode moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysExpDescriptionByNASCstockCode:2006-08-27T14-24-22Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves NASCArrays experiment description for a given NASC stock code, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'N1093', 'NW20' getNASCArraysExpDescriptionByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCArraysExpDescriptionByNASCstockCode NASC_code NASCexperimentDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCcollectionByDonorNumber:2006-08-29T07-47-41Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of the collection from which the given NASC donor number belongs to from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013\. getNASCcollectionByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getNASCcollectionByDonorNumber NASCdonorNumber NASCcollection moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByNASCstockCode:2006-08-29T07-47-49Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the NASC donor name for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N4', 'N933', 'N3074', 'N1150'. getNASCdonorNameByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCdonorNameByNASCstockCode NASC_code NASCdonorName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getMAS5normalisedDataByNASCArraysSlide:2006-08-31T14-52-32Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves the expression values for a given Affymetrix ProbeSet ID by Slide name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Durrant_1-1_wild-type_Rep1_ATH1'. getMAS5normalisedDataByNASCArraysSlide false beatrice@arabidopsis.info arabidopsis.info getMAS5normalisedDataByNASCArraysSlide NASCArraysSlide ExpressionData moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByInsertNumber:2006-08-29T07-48-24Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the NASC donor surname for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CSHL:ET84. getNASCdonorNameByInsertNumber false beatrice@arabidopsis.info arabidopsis.info getNASCdonorNameByInsertNumber ATH_Insert_number NASCdonorName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysReferenceNumberByNASCstockCode:2006-08-29T08-58-14Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves the NASCArrays reference number for a given NASC stock code from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'NW20'. getNASCArraysReferenceNumberByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCArraysReferenceNumberByNASCstockCode NASC_code NASCArraysReferenceNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisPublicationsByNASCstockName:2006-08-29T07-48-02Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis publications for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'salk_000013 (O)'. getArabidopsisPublicationsByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisPublicationsByNASCstockName NASCstockName Publication moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByNASCstockCode:2007-10-04T10-54-05Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given NASC stock Code from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: NW20 getNASCphenotypeByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByNASCstockCode NASC_code Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByKeyword:2006-08-29T07-49-07Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given keyword from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: David Meinke getNASCphenotypeByKeyword false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByKeyword Global_Keyword Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByNASCinsertNumber:2006-08-29T07-47-42Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the description of a stock for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: '083008'. getNASCstockDescriptionByNASCinsertNumber false beatrice@arabidopsis.info arabidopsis.info getNASCstockDescriptionByNASCinsertNumber ATH_Insert_number StockDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockCodeByAGI:2006-08-29T07-47-54Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC_codes for a given AGI locus code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: At1g20310. getNASCstockCodeByAGI false beatrice@arabidopsis.info arabidopsis.info getNASCstockCodeByAGI AGI_LocusCode NASC_code moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCdonorNameByMutagen:2006-08-29T07-48-23Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the NASC donor surname for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: EMS. getNASCdonorNameByMutagen false beatrice@arabidopsis.info arabidopsis.info getNASCdonorNameByMutagen NASCmutagen NASCdonorName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByInsertNumber:2006-08-29T07-48-43Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC mutagens for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008. getArabidopsisMutagenByInsertNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisMutagenByInsertNumber ATH_Insert_number NASCmutagen moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByNASCseedType:2006-08-29T07-48-11Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given seed type from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'Single marker'. getEMBLaccessionByNASCseedType false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByNASCseedType NASCseedType EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisImageByNASCdonorName:2006-08-30T12-21-23Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis images for a given NASC donor namefrom the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'Kevin Pyke'. getArabidopsisImageByNASCdonorName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisImageByNASCdonorName NASCdonorName NASC_image moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeBySeedType:2006-08-29T07-49-09Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given NASC seed type from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: Single marker. getNASCphenotypeBySeedType false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeBySeedType NASCseedType Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisLocusByAllele:2006-08-29T07-48-14Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the locus for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: aux1-7. getArabidopsisLocusByAllele false beatrice@arabidopsis.info arabidopsis.info getArabidopsisLocusByAllele NASCallele Locus moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByNASCstockName:2006-08-29T07-48-47Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC mutagens for a given stock name from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: apetala. getArabidopsisMutagenByNASCstockName false beatrice@arabidopsis.info arabidopsis.info getArabidopsisMutagenByNASCstockName NASCstockName NASCmutagen moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByMutagen:2006-08-29T07-48-39Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC ecotypes for a given mutagen from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input:EMS . getArabidopsisEcotypeByMutagen false beatrice@arabidopsis.info arabidopsis.info getArabidopsisEcotypeByMutagen NASCmutagen NASCecotypeName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisHabitatByNASCstockCode:2006-08-29T07-47-37Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the habitat in which Arabidopsis grows for a given stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N900', 'N901', 'N902', 'N960', 'N1150'. getArabidopsisHabitatByNASCstockCode false beatrice@arabidopsis.info arabidopsis.info getArabidopsisHabitatByNASCstockCode NASC_code ArabidopsisHabitat moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByEcotypeName:2006-08-29T07-47-52Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the givenecotype name from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: 'Ag-0'. getNASCphenotypeByEcotypeName false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByEcotypeName NASCecotypeName Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getEMBLaccessionByDonorNumber:2006-08-29T07-48-06Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the EMBL accession number for a given donor number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'fah1-7 ttg'. getEMBLaccessionByDonorNumber false beatrice@arabidopsis.info arabidopsis.info getEMBLaccessionByDonorNumber NASCdonorNumber EMBL moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysReferenceNumberBySlideName:2006-08-27T16-05-37Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves NASCArrays reference number for a given slide name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'Penfield_1-1_endosperm-control_Rep1_ATH1'. getNASCArraysReferenceNumberBySlideName false beatrice@arabidopsis.info arabidopsis.info getNASCArraysReferenceNumberBySlideName NASCArraysSlide NASCArraysReferenceNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCArraysSlideByExperimentName:2006-08-30T08-56-31Z http://arabidopsis.info/cgi-bin/moby_services/Services/microarray_services/array_services.cgi Retrieves slide names for a given experiment name from NASCArrays, Nottingham Arabidopsis Stock Centre's microarray database (http://affy.arabidopsis.info). Example input: 'FRI FLC combos'. getNASCArraysSlideByExperimentName false beatrice@arabidopsis.info arabidopsis.info getNASCArraysSlideByExperimentName NASCArraysExperimentName NASCArraysSlide moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCphenotypeByMutagen:2006-08-29T07-49-13Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves Arabidopsis phenotypes corresponding to the given mutagen from the Nottingham Arabidopsis Stock Centre germplasm database (http://arabidopsis.info). Example input: NMB getNASCphenotypeByMutagen false beatrice@arabidopsis.info arabidopsis.info getNASCphenotypeByMutagen NASCmutagen Phenotype moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockDescriptionByStockCode:2006-08-29T07-47-38Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the description of a stock for a given NASC stock code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 'N500013', 'N3074'. getNASCstockDescriptionByStockCode false beatrice@arabidopsis.info arabidopsis.info getNASCstockDescriptionByStockCode NASCstockcode StockDescription moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByAllele:2006-08-29T07-48-41Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC mutagens for a given allele from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer5-1. getArabidopsisMutagenByAllele false beatrice@arabidopsis.info arabidopsis.info getArabidopsisMutagenByAllele ArabidopsisGeneSymbol NASCmutagen moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCstockNameBySeedType:2006-08-29T07-48-36Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves the name of a stock for a given type of seed from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: Single marker. getNASCstockNameBySeedType false beatrice@arabidopsis.info arabidopsis.info getNASCstockNameBySeedType NASCseedType NASCstockName moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getNASCinsertByABRCcode:2006-08-29T07-48-48Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC insert numbers for a given ABRC code from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: CS25583. getNASCinsertByABRCcode false beatrice@arabidopsis.info arabidopsis.info getNASCinsertByABRCcode NASCstockName InsertNumber moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisMutagenByLocus:2006-08-29T07-48-44Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC mutagens for a given locus from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: cer2. getArabidopsisMutagenByLocus false beatrice@arabidopsis.info arabidopsis.info getArabidopsisMutagenByLocus ArabidopsisGeneSymbol NASCmutagen moby urn:lsid:biomoby.org:serviceinstance:arabidopsis.info,getArabidopsisEcotypeByInsertNumber:2006-08-29T07-48-38Z http://arabidopsis.info/cgi-bin/moby_services/Services/germplasm_services/germplasm_services.cgi Retrieves NASC ecotypes for a given insert number from the Nottingham Arabidopsis Stock Centre Germplasm database (http://arabidopsis.info). Example input: 083008. getArabidopsisEcotypeByInsertNumber false beatrice@arabidopsis.info arabidopsis.info getArabidopsisEcotypeByInsertNumber ATH_Insert_number NASCecotypeName moby urn:lsid:biomoby.org:serviceinstance:www.legoo.org,AmpliconsFormatConverter:2009-11-13T15-33-06Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher.cgi AmpliconsFormatConverter Convert primers results from e-PCR, primerSearch(EMBOSS), NarcisseRegion and legoo PrimerSearch into Legoo, Narcisse or e-PCR format http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_AmpliconsFormatConverter.rdf AmpliconsFormatConverter false marion.verdenaud@toulouse.inra.fr www.legoo.org AmpliconsFormatConverter infile species if the input is not legoo_PrimerSearch format, you can specify the specie String force_input force the infile format false String false true infile_format define the format of the infile, allowed values are : auto,e-PCR,primer_search,narcisse,legoo auto String auto e-PCR legoo narcisse primer_search outfile_format define the format of the output, allowed values are : e-PCR,narcisse,legoo narcisse String e-PCR legoo narcisse outfile moby-async urn:lsid:biomoby.org:serviceinstance:www.legoo.org,LegooPrimerSearch:2009-11-06T11-00-13Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher-async.cgi LegooPrimerSearch Looks for primers amplimers http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_LegooPrimerSearch.rdf LegooPrimerSearch false sebastien.carrere@toulouse.inra.fr,marion.verdenaud@toulouse.inra.fr www.legoo.org LegooPrimerSearch primers max_size_amplimer the maximum size of the amplimer / amplicon 2000 Integer software the software used e-PCR String e-PCR primer_search mismatches 0 100 the percentage maximum of mismatches 0 Integer genome the genome to scan medicago_truncatula_v3 String glycine_max_v1 lotus_japonicus_v1.1 medicago_truncatula_v1 medicago_truncatula_v2 medicago_truncatula_v3 amplimers moby urn:lsid:biomoby.org:serviceinstance:www.legoo.org,MensGetExpressionPattern:2008-06-10T11-28-39Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher.cgi MensGetExpressionPattern This program takes a identifier of Mens and return an image corresponding to it expression pattern http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_MensGetExpressionPattern.rdf MensGetExpressionPattern false marion.verdenaud@toulouse.inra.fr www.legoo.org MensGetExpressionPattern mens_accession format the type of the format (simplified=class,complete=library and class) simplified String simplified complete mens_expression_pattern moby-async urn:lsid:biomoby.org:serviceinstance:www.legoo.org,LegooGetKnowledgeBaseRelationships:2009-12-11T08-36-31Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher-async.cgi LegooGetKnowledgeBaseRelationships Look for relationships in the database KnowledgeBase http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_LegooGetKnowledgeBaseRelationships.rdf LegooGetKnowledgeBaseRelationships false marion.verdenaud@toulouse.inra.fr,sebastien.carrere@toulouse.inra.fr www.legoo.org LegooGetKnowledgeBaseRelationships infile check_ID if check_ID is false, we consider that the identifier matches exactly with an object of the database true String false true genotype genotype filtering ALL String ALL Medicago truncatula genotype F83005.5 Medicago truncatula genotype jemalong 2HA Medicago truncatula genotype jemalong A17 Sinorhizobium meliloti strain 1021 Sinorhizobium meliloti strain 2011 Sinorhizobium meliloti strain GMI11495 universal species genotype refstrain relationship_type relation ship tuype filtering ALL String ALL activates encodes induces inhibits involves is associated with is part of produces regulates represses factor_filtering factor filtering String object_type object type of the query filtering ALL String ALL EST IS MISC MOTIF RIME RNA affy probe biological process cDNA environment gene localization macromolecular complex metabolite molecular signal oligo origin of replication protein repeat region direct filter by the direction of the relationship unknown String no unknown yes condition condition filtering String outfile moby-async urn:lsid:biomoby.org:serviceinstance:www.legoo.org,LegooNicknamesGetSeq:2009-10-07T16-09-29Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher-async.cgi LegooNicknamesGetSeq Look for sequences in Legoo database. http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_LegooNicknamesGetSeq.rdf LegooNicknamesGetSeq false sebastien.carrere@toulouse.inra.fr,marion.verdenaud@toulouse.inra.fr www.legoo.org LegooNicknamesGetSeq identifiers outfile moby-async urn:lsid:biomoby.org:serviceinstance:www.legoo.org,LegooBlast:2009-11-06T10-55-36Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher-async.cgi LegooBlast Performs a blast versus Legoo banks (clusters, ESTs, peptides) http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_LegooBlast.rdf LegooBlast false sebastien.carrere@toulouse.inra.fr,marion.verdenaud@toulouse.inra.fr www.legoo.org LegooBlast sequence method Blast method (wu-blast or ncbi-blast) wu-blastn String ncbi-blastn ncbi-blastp ncbi-blastx ncbi-tblastn ncbi-tblastx wu-blastn wu-blastp wu-blastx wu-tblastn wu-tblastx bank Bank to blast IMGA-Mt3-gene String ASRP_(Arabidopsis_thaliana_Small_RNA_Project) Arabidopsis_thaliana_proteome_TAIR7_release Fabaceae.mRNA.GBKJan2009 Gm.affx-1 Gm.ncbi36 GmGI13 Gma1.01.gene_(Glycine_max) IMGA-Mt2-gene IMGA-Mt3-gene Lj-1.0_(Lotus_japonicus_genome) Lj1.0.CDS Lj1.0.protein Mt-2.0_(Mt_genome) Mt.mRNA.GBKJan2009 Mt.perox.Fev2009 Mt1.0.mRNA Mt16kOLIplus-2004 Mt6kRIT-Jan2003 MtCDJan2003 MtGI5 MtGI6 MtGI7 MtGI8 MtGI9 MtSCDJan2003 MtSCDJun2006 NCR-2003 Swiss-Prot affx-1 mirBase blast_parameters WU-BLAST parameters or NCBI-BLAST parameters String blast_output hit_sequences moby-async urn:lsid:biomoby.org:serviceinstance:www.legoo.org,LegooBlastFromXml:2009-11-06T10-57-01Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher-async.cgi LegooBlastFromXml Performs a blast versus Legoo banks (clusters, ESTs, peptides) http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_LegooBlastFromXml.rdf LegooBlastFromXml false sebastien.carrere@toulouse.inra.fr,marion.verdenaud@toulouse.inra.fr www.legoo.org LegooBlastFromXml sequence bank Bank to blast IMGA-Mt3-gene String ASRP_(Arabidopsis_thaliana_Small_RNA_Project) Arabidopsis_thaliana_proteome_TAIR7_release Fabaceae.mRNA.GBKJan2009 Gm.affx-1 Gm.ncbi36 GmGI13 Gma1.01.gene_(Glycine_max) IMGA-Mt2-gene IMGA-Mt3-gene Lj-1.0_(Lotus_japonicus_genome) Lj1.0.CDS Lj1.0.protein Mt-2.0_(Mt_genome) Mt.mRNA.GBKJan2009 Mt.perox.Fev2009 Mt1.0.mRNA Mt16kOLIplus-2004 Mt6kRIT-Jan2003 MtCDJan2003 MtGI5 MtGI6 MtGI7 MtGI8 MtGI9 MtSCDJan2003 MtSCDJun2006 NCR-2003 Swiss-Prot affx-1 mirBase blast_parameters WU-BLAST parameters or NCBI-BLAST parameters String method Blast method (wu-blast or ncbi-blast) wu-blastn String ncbi-blastn ncbi-blastp ncbi-blastx ncbi-tblastn ncbi-tblastx wu-blastn wu-blastp wu-blastx wu-tblastn wu-tblastx blast_output hit_sequences moby-async urn:lsid:biomoby.org:serviceinstance:www.legoo.org,LegooNicknamesSearch:2010-03-12T10-04-58Z http://www.legoo.org/biomoby/playmoby/cgi/dispatcher-async.cgi LegooNicknamesSearch Look for synonyms in Legoo database. The maximum number of input identifiers allowed is 5000 http://www.legoo.org/biomoby/playmoby/rdf/mobycentral_LegooNicknamesSearch.rdf LegooNicknamesSearch false sebastien.carrere@toulouse.inra.fr,marion.verdenaud@toulouse.inra.fr www.legoo.org LegooNicknamesSearch identifiers compare_to Target to compare to all String Fabaceae.mRNA.GBKJan2009 Gm.affx-1 Gm.ncbi36 GmGI13 Gma1.01.gene IMGA-Mt2-gene IMGA-Mt3-gene Mt.genomic.GBKDec2009 Mt.mRNA.GBKJan2009 Mt.perox.Fev2009 Mt1.0.mRNA Mt16kOLIplus-2004 Mt6kRIT-Jan2003 MtCDJan2003 MtGI5 MtGI6 MtGI7 MtGI8 MtGI9 MtSCDJan2003 MtSCDJun2006 NCR-2003 Swiss-Prot TAIR9_pep affx-1 all forced_array For duplicated id you can force the data source none String GmGI13 Mt.genomic.GBKDec2009 Mt1.0.mRNA MtCDJan2003 MtGI5 MtGI6 MtGI7 MtGI8 MtGI9 MtSCDJan2003 MtSCDJun2006 none report_file target_ids full_table moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getAtNoPDBLabelImageByAgi:2008-07-24T12-01-30Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getAtNoPDBLabelImageByAgi Wrapper for the Arabidopsis thaliana Nucleolar Protein Databse (AtNoPDB) at the Scottish Crop Research Institute, which provides a collection of images showing the cellular localisation of nucleolar proteins by GFP labelling. http://bioinfo.mpiz-koeln.mpg.de/rdf/getAtNoPDBLabelImageByAgi.rdf getAtNoPDBLabelImageByAgi true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getAtNoPDBLabelImageByAgi incomingAGI outImages moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,BuildPhylogeneticTreeFromFastaAlignment:2009-05-28T05-49-13Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/BuildPhylogeneticTreeFromFastaAlignment Builds the most accurate phylogenetic tree. For small trees (< 20 sequences) a maximum likelihood approach (Phyml) and for greater trees a very good and high performance neighbor joining algorithm (BioNJ) is used. http://bioinfo.mpiz-koeln.mpg.de/rdf/BuildPhylogeneticTreeFromFastaAlignment.rdf BuildPhylogeneticTreeFromFastaAlignment true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de BuildPhylogeneticTreeFromFastaAlignment alignment phyogenetic_tree moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getAGIInteraction:2009-01-12T07-27-01Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getAGIInteraction Returns an AGI locus code for a given AGI locus code iff they are partners in an interaction defined by TAIR. In addition the 3 letter evidence code from GO is used to determine how the interaction is trustworthy. http://bioinfo.mpiz-koeln.mpg.de/rdf/getAGIInteraction.rdf getAGIInteraction true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getAGIInteraction agi interaction_agi moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getInteractionByUniProtAcc:2008-08-12T06-28-09Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getInteractionByUniProtAcc Returns for a given uniprot acc the interactions as given by the IntAct database. http://bioinfo.mpiz-koeln.mpg.de/rdf/getInteractionByUniProtAcc.rdf getInteractionByUniProtAcc true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getInteractionByUniProtAcc input_id interactions moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,Blast_Against_RefSeq_Complete_Sequenced_Organisms:2008-02-29T10-51-45Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/Blast_Against_RefSeq_Complete_Sequenced_Organisms Runs a blastp search against the RefSeq database, which includes only complete sequenced organisms. http://bioinfo.mpiz-koeln.mpg.de/rdf/Blast_Against_RefSeq_Complete_Sequenced_Organisms.rdf Blast_Against_RefSeq_Complete_Sequenced_Organisms false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de Blast_Against_RefSeq_Complete_Sequenced_Organisms sequence filterHits T String T F output tab String pairwise tab xml numberOfDescriptionLines 1 1000 50 Integer numberOfAlignments 1 1000 50 Integer e_threshold 0 10 1 Float blast_result moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getAutomaticAndManualAnnotationByAFAWE_ID:2008-06-13T11-32-13Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getAutomaticAndManualAnnotationByAFAWE_ID Returns available manual annotations (manual annotation added by users) and automatic annotations (predicted by Sifter) for a given AFAWE ID (http://bioinfo.mpiz-koeln.mpg.de/afawe/). http://bioinfo.mpiz-koeln.mpg.de/rdf/getAutomaticAndManualAnnotationByAFAWE_ID.rdf getAutomaticAndManualAnnotationByAFAWE_ID true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getAutomaticAndManualAnnotationByAFAWE_ID afawe_id manual_annotation_pathway manual_annotation_description_line manual_annotation_FunCat manual_annotation_KO_term manual_annotation_GO_term sifter_annotation manual_annotation_EC_Number moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,ID2PMID:2008-10-13T12-20-12Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/ID2PMID Maps a database identifier to its PubMedIDs http://bioinfo.mpiz-koeln.mpg.de/rdf/ID2PMID.rdf ID2PMID true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de ID2PMID id pmids moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,ID2IDs:2008-12-23T20-28-10Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/ID2IDs Maps an database identifer to a collection of its equivalent form other database identfiers. The search is working for the following namespaces: UniProt_acc, UniProt_ID, RefSeq, NCIBI_gi, KEGG and Entrez id. But it returns for one of these identfiers the others and information of IPI, PIRSF, MIM, Ensemble protein_id, Entrez and PIR_PSD, EMBL, taxon, AGI LocusCode http://bioinfo.mpiz-koeln.mpg.de/rdf/ID2IDs.rdf ID2IDs true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de ID2IDs id ids moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,EBI_InterproScan:2008-12-23T20-02-46Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/EBI_InterproScan Runs the InterproScan service from the European Bioinformatics institute (EBI) http://bioinfo.mpiz-koeln.mpg.de/rdf/InterproScan.rdf EBI_InterproScan false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de EBI_InterproScan sequence email seqtype protein String DNA protein apps all String HMMPIR HMMsmart all SuperFamily BlastProDom ScanRegExp HMMPfam FPrintScan ProfileScan HMMTigr outformat raw String xml raw interproscan_result moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,ID2GO:2008-10-09T06-37-50Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/ID2GO Maps an database identifier to its GO terms http://bioinfo.mpiz-koeln.mpg.de/rdf/ID2GO.rdf ID2GO true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de ID2GO id gos moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,GO_Test:2009-01-14T12-32-19Z http://app-test:8080/axis/services/GO_Test Returns for a given RefSeq ID GO terms from different databases (GO annotation files were downloaded from Gene Ontology) GO_Test true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de GO_Test refseq_id go_term moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,get_go_information_by_go_term:2007-10-01T13-23-20Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/get_go_information_by_go_term Returns for a given GO term name, description and GO process (molecular function, biological process, cellular component) http://bioinfo.mpiz-koeln.mpg.de/rdf/get_go_information_by_go_term.rdf get_go_information_by_go_term false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de get_go_information_by_go_term go_term go_summary moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,Blast_Against_Proteins_With_Exp_Verified_GO_Term:2007-04-26T13-26-26Z http://localhost:8080/axis/services/Blast_Against_Proteins_With_Exp_Verified_GO_Term This Web Service gets an AA-sequence as input, runs a blast search against a database with proteins which have an experimental verified GO Term and returns the blast report and a multiples fasta file, which can be used as input in the muscle alignment service. Blast_Against_Proteins_With_Exp_Verified_GO_Term false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de Blast_Against_Proteins_With_Exp_Verified_GO_Term query_protein query_protein_name multiples_fasta_file blast_report moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getAFAWEProteinIDBySequenceAndOrganism:2008-05-05T11-52-55Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getAFAWEProteinIDBySequenceAndOrganism Returns the AFAWE (http://bioinfo.mpiz-koeln.mpg.de/afawe/) IDs for the given amino acid sequence and organism. Please use as organism name the taxonomic name (e.g. "Arabidopsis thaliana" or "Homo sapiens") http://bioinfo.mpiz-koeln.mpg.de/rdf/getAFAWEProteinIDBySequenceAndOrganism.rdf getAFAWEProteinIDBySequenceAndOrganism false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getAFAWEProteinIDBySequenceAndOrganism organism sequence AFAWE_ID moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,buildMultipleAlignmentWithMAFFT:2009-05-28T06-02-21Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/buildMultipleAlignmentWithMAFFT Builds a multiple alignment with MAFFT from a set of fasta files. http://bioinfo.mpiz-koeln.mpg.de/rdf/buildMultipleAlignmentWithMAFFT.rdf buildMultipleAlignmentWithMAFFT true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de buildMultipleAlignmentWithMAFFT fasta fasta_alignment moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,ID2Taxonomy:2008-12-11T09-54-16Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/ID2Taxonomy Maps an database identifier to its taxonomy, containing the taxon id as the identifier and the scientifc name. http://bioinfo.mpiz-koeln.mpg.de/rdf/ID2Taxonomy.rdf ID2Taxonomy true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de ID2Taxonomy id taxonomy moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,ID2PFAM:2008-10-09T06-52-40Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/ID2PFAM Maps a database identifier to its PFAM ids http://bioinfo.mpiz-koeln.mpg.de/rdf/ID2PFAM.rdf ID2PFAM true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de ID2PFAM id pfams moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,get_GO_Term_by_Database_ID:2007-10-01T13-21-45Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/get_GO_Term_by_Database_ID Returns for a given RefSeq ID GO terms from different databases (GO annotation files were downloaded from Gene Ontology) http://bioinfo.mpiz-koeln.mpg.de/rdf/get_GO_Term_by_Database_ID.rdf get_GO_Term_by_Database_ID false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de get_GO_Term_by_Database_ID refseq_id go_term moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,EBI_WU_Blast:2008-08-11T08-56-51Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/EBI_WU_Blast Runs the WU-Blast service from the European Bioinformatics institute (EBI) against the database, which is given by parameter. http://bioinfo.mpiz-koeln.mpg.de/rdf/EBI_WU_Blast.rdf EBI_WU_Blast true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de EBI_WU_Blast sequence email numal 100 500 100 Integer program blastp String blastx blastp blastn tblastn database uniprot String imgthlap ipi uniprot pdb uniref50 uniref90 uniref100 prints sgt swissprot uniparc outformat raw String raw xml e_threshold 0 10 1 Float blast_result moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getKOTerms:2008-08-12T06-25-05Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getKOTerms Wrapper for the Kegg database to return for a given uniprot ID or gi the KO terms http://bioinfo.mpiz-koeln.mpg.de/rdf/getKOTerms.rdf getKOTerms true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getKOTerms input_id kos moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,RunSifter:2009-01-12T12-44-21Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/RunSifter SIFTER uses a phylogenomic inference algorithm to transfer Ontology terms inside a phylogenetic tree. The result are GO Terms predicted by SIFTER for the gene with name "gene_name". Please make sure, that "gene_name" is in phylogenetic tree and the other genes in the tree are RefSeqProt proteins! http://bioinfo.mpiz-koeln.mpg.de/rdf/RunSifter.rdf RunSifter true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de RunSifter organism phyogenetic_tree alignment gene_name scale_file family_file forester_file pli_file GO_term moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getRAPIDPhenotypeImageByAGI:2008-07-26T06-04-39Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getRAPIDPhenotypeImageByAGI Wrapper for the "RIKEN Arabidopsis Phenome Information Database" (RAPID) http://bioinfo.mpiz-koeln.mpg.de/rdf/getRAPIDPhenotypeImageByAGI.rdf getRAPIDPhenotypeImageByAGI true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getRAPIDPhenotypeImageByAGI incomingAGI outImages moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getAFAWEProteinIDByGOTerm:2008-05-05T11-54-09Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getAFAWEProteinIDByGOTerm Returns the AFAWE (http://bioinfo.mpiz-koeln.mpg.de/afawe/) IDs, which have the given GO term (e.g. "GO:0002345" or "0003422" or just "2345") or a child GO term of the given GO term. Please be aware, that it could take some time, if the GO term is on the first level of GO. Using the secondary inputs of the service the source organism can be specified as taxonomic name (e.g. "Medicago truncatula" or "Arabidopsis thaliana"). Default is: Take all organism (all). Additionally it can be chosen if only associations between proteins and GO terms predicated by SIFTER (sifter), only terms collected from several databases (stored) or all GO terms (all) are considered (secondary: which_go_terms). Furthermore it can be defined (secondary: reliability), if the GO term of the returned proteins (protein IDs) must be experimentally verified (experimantally_verified), experimentally verified or reviewed (curated) or allow also automatically predicted GO terms (all). http://bioinfo.mpiz-koeln.mpg.de/biomoby_rdf/getAFAWEProteinIDByGOTerm.rdf getAFAWEProteinIDByGOTerm false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getAFAWEProteinIDByGOTerm go_term organism all String reliability all String experimentally_verified curated all which_go_terms all String sifter all stored AFAWE_ID moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,RunSifter_NewVersion:2008-12-19T14-22-07Z http://app-test:8080/axis/services/RunSifter_NewVersion Testing version of the new sifter RunSifter_NewVersion true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de RunSifter_NewVersion phylogenetic_tree organism alignment gene_name forester_file pli_file GO_terms moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,get_other_database_accessions_by_database_accession:2007-10-04T07-02-25Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/get_other_database_accessions_by_database_accession Gets a database identifier as input and returns all stored alternative names (database identifiers, accessions, locus codes, ...) from the AFAWE database. http://bioinfo.mpiz-koeln.mpg.de/rdf/get_other_database_accessions_by_database_accession.rdf get_other_database_accessions_by_database_accession false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de get_other_database_accessions_by_database_accession input alt_name moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,runAFAWEAnalysesBySequenceAndOrganismAndGetAFAWE_URL:2008-05-27T09-15-51Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/runAFAWEAnalysesBySequenceAndOrganismAndGetAFAWE_URL Runs all functional analyses integrated in AFAWE (http://bioinfo.mpiz-koeln.mpg.de/afawe/) and returns AFAWE URL to have a detailed look at the results. Please use as organism the taxonomic name (e.g. Mus musculus or Arabidopsis thaliana). Depending on the tools, which you choose, this can take up to 20 minutes. So please check the web site on your own. If it is finished, you will see the results there. For further documentation about run tools have a look at: http://bioinfo.mpiz-koeln.mpg.de/afawe/help/Tools.html http://bioinfo.mpiz-koeln.mpg.de/rdf/runAFAWEAnalysesBySequenceAndOrganismAndGetAFAWE_URL.rdf runAFAWEAnalysesBySequenceAndOrganismAndGetAFAWE_URL true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de runAFAWEAnalysesBySequenceAndOrganismAndGetAFAWE_URL sequence organism ncbiblast_refseq 1 String 1 0 rpsblast 1 String 1 0 wublast_swissprot 1 String 1.0 1 0 interproscan 1 String 1 0 sifter_pipeline 1 String 1 0 wublast_uniprot 1 String 1 0 afawe_url moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,get_agi_code_by_keyword:2008-12-23T20-00-38Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/get_agi_code_by_keyword Gets a keyword as input, runs a fulltext search in the alternative names and the description lines of the AFAWE database and returns a collection of AGI locus codes with description. http://bioinfo.mpiz-koeln.mpg.de/rdf/get_agi_code_by_keyword.rdf get_agi_code_by_keyword false joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de get_agi_code_by_keyword keyword agi_locus_code moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getAGI_LocusCode_byITAG_ID:2010-02-10T14-48-42Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getAGI_LocusCode_byITAG_ID Takes a transcript_ITAG Id as input and returns a AGI Locus Code according to sequence similarity. The returned AGI code was scored highest while using BLAST-P. getAGI_LocusCode_byITAG_ID true fhoffman@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getAGI_LocusCode_byITAG_ID input output moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,ID2PDB:2008-10-09T07-01-32Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/ID2PDB Maps an database identifier to its PDB ids http://bioinfo.mpiz-koeln.mpg.de/rdf/ID2PDB.rdf ID2PDB true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de ID2PDB id pdb moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,GetInAndOrthologsFromRefSeq:2009-05-28T05-51-46Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/GetInAndOrthologsFromRefSeq Runs a iterative Blastp searches against the RefSeq database with only full sequenced organisms. Inparalogs and Orthologs are returned in fasta format http://bioinfo.mpiz-koeln.mpg.de/rdf/GetInAndOrthologsFromRefSeq.rdf GetInAndOrthologsFromRefSeq true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de GetInAndOrthologsFromRefSeq sequence gene_name organism fasta moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,GetConservedDomainsFromFastaAlignment:2009-05-28T05-54-38Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/GetConservedDomainsFromFastaAlignment Extract conserved regions from fasta alignment. http://bioinfo.mpiz-koeln.mpg.de/rdf/GetConservedDomainsFromFastaAlignment.rdf GetConservedDomainsFromFastaAlignment true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de GetConservedDomainsFromFastaAlignment fasta_alignment alignment moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,getSeedGeneMutantImageByAGI:2008-07-24T11-59-23Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/getSeedGeneMutantImageByAGI Wrapper for the SeedGenesEmbryoImage web service will take an AGI_LocusCode and return a set of Nomarski microscopy images of an Arabidopsis seed with the embryo at the typical stage that development is arrested for a nock-out mutant at that gene. http://bioinfo.mpiz-koeln.mpg.de/rdf/getSeedGeneMutantImageByAGI.rdf getSeedGeneMutantImageByAGI true groscurt@mpiz-koeln.mpg.de mpiz-koeln.mpg.de getSeedGeneMutantImageByAGI agi out_images moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,DummyTest:2009-01-12T13-11-20Z http://app-test:8080/axis/services/DummyTest Runs a iterative Blastp searches against the RefSeq database with only full sequenced organisms. Inparalogs and Orthologs are returned in fasta format DummyTest true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de DummyTest sequence gene_name organism fasta moby urn:lsid:biomoby.org:serviceinstance:mpiz-koeln.mpg.de,RPSBlast:2008-06-25T06-04-47Z http://bioinfo.mpiz-koeln.mpg.de/axis/services/RPSBlast Runs a RPSBlast search against the Conserved Domain Database of the NCBI. Result is the raw blast result http://bioinfo.mpiz-koeln.mpg.de/rdf/RPSBlast.rdf RPSBlast true joecker@mpiz-koeln.mpg.de mpiz-koeln.mpg.de RPSBlast sequence e_threshold 0 10 1 Float low_complexity_filter F String T F seqtype T String T F rpsblast_result moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,ConcatSequences:2008-02-29T01-48-01Z http://hpc.irri.cgiar.org:8080/axis/services/ConcatSequences A simple service that concatenates input sequences. It can have up to three inputs. It is a service from the tutorial series: It can be used to illustrate that a MoSeS-based service can accept several more specialized primary inputs and still correctly assign them their fallback type (a type the service was registered for). The same functionality can be found in the "ConcatSequenceSet" service that operates on an input collection. ConcatSequences true martin.senger@gmail.com samples.jmoby.net ConcatSequences seq3 seq2 seq1 return_only_length false Boolean result moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,TestServiceNotes:2008-02-29T02-00-18Z http://hpc.irri.cgiar.org:8080/axis/services/TestServiceNotes A service from a tutorial series that shows what can be carried on in the so-called "service notes" (an information provided by the service providers to the service users about the service invocation). As a side-effect, this service also tests MobyDataType (both in input and output) - because there are not many services using this data type. TestServiceNotes true martin.senger@gmail.com samples.jmoby.net TestServiceNotes input_date output_date moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,getReverseEchoString:2008-09-03T19-24-34Z http://localhost:8080/cgi-bin/AsyncMobyServer.cgi This service consumes a string of text and returns the reverse string back to the caller getReverseEchoString true your.email@domain.com samples.jmoby.net getReverseEchoString my_input_string my_reverse_string moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,Mabuhay:2008-02-29T02-14-03Z http://hpc.irri.cgiar.org:8080/axis/services/Mabuhay How to say "Hello" in many languages. Heavily based on a web resource "Greetings in more than 800 languages", maintained at http://www.elite.net/~runner/jennifers/hello.htm by Jennifer Runner. Mabuhay true martin.senger@gmail.com samples.jmoby.net Mabuhay language hello moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,ConcatSequenceSet:2008-02-29T01-42-39Z http://hpc.irri.cgiar.org:8080/axis/services/ConcatSequenceSet A simple service that concatenates sequences contained in an input collection. It is a service from the tutorial series: It can be used to illustrate that a MoSeS-based service can accept more specialized collection elements and still correctly assign them their fallback type (a type the service was registered for). The same functionality can be found in the "ConcatSequences" service that operates on individual primary inputs. ConcatSequenceSet true martin.senger@gmail.com samples.jmoby.net ConcatSequenceSet seqs return_only_length If set to true, the service does not retun back the concatenated sequence string but only its length. Default value is false. false Boolean result moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,HelloBiomobyWorld2:2008-06-11T19-01-10Z http://ubuntu.localhost/cgi-bin/MobyServer.cgi This is a cult service, known to an exclusive group of persons sharing an esoteric interest. One of their beliefs is that a world started on January, 1 1970. HelloBiomobyWorld2 true martin.senger@gmail.com samples.jmoby.net HelloBiomobyWorld2 isNiceGreeting true Boolean typeOfGreeting Hello String Hello Goodbye greeting moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,TextExtract:2008-02-29T02-06-51Z http://hpc.irri.cgiar.org:8080/axis/services/TextExtract This service extracts the real content of an input text and returns it as a primitive String type. The main reason is to show that one can send a more specialized data type to this service (even though the service claims that it operates only on text-plain data type). The service is part of the tutorial series and documentation of the MoSeS system - its source code is distributed with jMoby. TextExtract true martin.senger@gmail.com samples.jmoby.net TextExtract input result moby urn:lsid:biomoby.org:serviceinstance:samples.jmoby.net,HelloBiomobyWorld:2008-02-29T01-55-12Z http://hpc.irri.cgiar.org:8080/axis/services/HelloBiomobyWorld This is a cult service, known to an exclusive group of persons sharing an esoteric interest. One of their beliefs is that a world started on January, 1 1970. HelloBiomobyWorld true martin.senger@gmail.com samples.jmoby.net HelloBiomobyWorld greeting moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,getCddConservedProteinDomainIdsByLabel:2009-01-12T22-38-20Z http://es-01.chibi.ubc.ca/mobyservices/services/getCddConservedProteinDomainIdsByLabel Returns zero or more CDD, Conserved Domain DB, identifiers given a short non-unique label. This service utilizes SHoundGetDomainIdFromLabel (www.blueprint.org). http://es-01.chibi.ubc.ca/~kawas/signatures/orphans/getCddConservedProteinDomainIdsByLabel getCddConservedProteinDomainIdsByLabel true ekawas@mrl.ubc.ca bioinfo.icapture.ubc.ca getCddConservedProteinDomainIdsByLabel label ids moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,getMESHIDs:2007-12-03T22-25-46Z http://moby.ucalgary.ca/moby_services/Services.cgi given a particular MeSH term or a fragment of a MeSH term, in namespace Global_Keyword, return the associated MeSH identifiers BY SUBSTRING MATCH in namespace MeSH. This uses a local, non-authoritative copy of the 2007 version of MeSH from the NLM. http://moby.ucalgary.ca/signatures/mesh.rdf getMESHIDs false markw@illuminae.com bioinfo.icapture.ubc.ca getMESHIDs meshterm meshids moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,getCogsConservedDomainIdsByLocusLinkId:2009-01-12T22-42-10Z http://es-01.chibi.ubc.ca/mobyservices/services/getCogsConservedDomainIdsByLocusLinkId Fetches all COG IDs from the Conserved Domain Database (CDD) for a given LocusLink ID (LLID), using SHoundCDDIDFromLLID. http://es-01.chibi.ubc.ca/~kawas/signatures/orphans/getCogsConservedDomainIdsByLocusLinkId getCogsConservedDomainIdsByLocusLinkId false ekawas@mrl.ubc.ca bioinfo.icapture.ubc.ca getCogsConservedDomainIdsByLocusLinkId locusLink ids moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,getPfamConservedDomainIdsByGi:2009-01-12T22-40-37Z http://es-01.chibi.ubc.ca/mobyservices/services/getPfamConservedDomainIdsByGi Fetches identifiers about domains from the Conserved Domain Database (CDD) as assigned by Reverse Position Specific BLAST to a given protein sequence. Uses redundancy information for the query proteins. This means that if the query fails for the input GI identifier, then the query will be retried for all other GI identifiers that belong to the same redundant group. This service utilizes SHoundGetDomainsFromGi (www.blueprint.org). http://es-01.chibi.ubc.ca/~kawas/signatures/orphans/getPfamConservedDomainIdsByGi getPfamConservedDomainIdsByGi false ekawas@mrl.ubc.ca bioinfo.icapture.ubc.ca getPfamConservedDomainIdsByGi gi_id evalue 0 .00000001 Float domain_ids moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,extractSequenceRecordsFromFastaIntoCollection:2009-01-12T22-39-05Z http://es-01.chibi.ubc.ca/mobyservices/services/extractSequenceRecordsFromFastaIntoCollection This services consumes a FASTA object containing multiple records, along with a collection of ID numbers in any namespace. The service returns those sequences whose records contain an extract match to those ID numbers passed in as input. http://es-01.chibi.ubc.ca/~kawas/signatures/orphans/extractSequenceRecordsFromFastaIntoCollection extractSequenceRecordsFromFastaIntoCollection false ekawas@mrl.ubc.ca bioinfo.icapture.ubc.ca extractSequenceRecordsFromFastaIntoCollection fastaRecord ids matches moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,BIND_IdSearchGetFastaByEntrezGeneId:2009-01-22T19-58-31Z http://dev.biordf.net/~kawas/cgi-bin/EdMobyServer.cgi Searches over the BIND protein-protein interaction database for the specified id and returns hits as FASTA sequences http://dev.biordf.net/~kawas/signatures/unittests/BIND_IdSearchGetFastaByEntrezGeneId BIND_IdSearchGetFastaByEntrezGeneId false ekawas@mrl.ubc.ca bioinfo.icapture.ubc.ca BIND_IdSearchGetFastaByEntrezGeneId id hits moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,BIND_IdSearchGetGOTermsByEntrezGeneId:2009-01-22T20-08-59Z http://dev.biordf.net/~kawas/cgi-bin/EdMobyServer.cgi Searches over the BIND protein-protein interaction database for the specified id and returns hits as GOTerms http://dev.biordf.net/~kawas/signatures/unittests/BIND_IdSearchGetGoTermsByEntrezGeneId BIND_IdSearchGetGOTermsByEntrezGeneId false ekawas@mrl.ubc.ca bioinfo.icapture.ubc.ca BIND_IdSearchGetGOTermsByEntrezGeneId id hits moby urn:lsid:biomoby.org:serviceinstance:bioinfo.icapture.ubc.ca,MOBYSHoundLocusIDFromOMIM:2009-01-12T22-45-00Z http://es-01.chibi.ubc.ca/mobyservices/services/MOBYSHoundLocusIDFromOMIM Fetches LocusLink IDs (LocusID) for a given Online Mendelian Inheritance in Man (OMIM) ID. http://es-01.chibi.ubc.ca/~kawas/signatures/orphans/MOBYSHoundLocusIDFromOMIM MOBYSHoundLocusIDFromOMIM false ekawas@mrl.ubc.ca bioinfo.icapture.ubc.ca MOBYSHoundLocusIDFromOMIM id